Changes between Version 4 and Version 5 of RunningUCERF3Inversions

Timestamp:

Jan 7, 2014, 4:41:23 PM (10 years ago)

Author:

Kevin Milner

Comment:

--

RunningUCERF3Inversions

@@ -90 +90 @@
 ||SpatSeisU2||UCERF2||
 ||'''SpatSeisU3'''||UCERF3||
+
+= Running on a Cluster =
+
+All cluster job submission scripts were written by scratch.UCERF3.simulatedAnnealing.hpc.LogicTreePBSWriter.main(String[]). Inversions were run at USC HPCC (smaller tests/prototypes) and TACC Stampede (production runs). Instructions are given below for running inversions in a similar cluster environment.
+
+== Many single node jobs ==
+The simplest way to run inversions on a cluster is to run a single inversion on each compute node, with a single submission script for each job. Sample job scripts are given below for both HPCC and Stampede. Paths and arguments would need to be modified for the user running the job.
+
+=== HPCC Example PBS SCript ===
+{{{
+#!/bin/bash
+
+#PBS -l walltime=00:360:00,nodes=1:quadcore:ppn=8
+#PBS -V
+
+/usr/usc/jdk/default/jre/bin/java -Djava.awt.headless=true -Xmx8000M -Xms8000M -cp /home/scec-02/kmilner/ucerf3/inversions/2013_05_10-ucerf3p3-cooling-tests/OpenSHA_complete.jar:/home/scec-02/kmilner/ucerf3/inversions/parallelcolt-0.9.4.jar:/home/scec-02/kmilner/ucerf3/inversions/commons-cli-1.2.jar:/home/scec-02/kmilner/ucerf3/inversions/csparsej.jar scratch.UCERF3.inversion.CommandLineInversionRunner --completion-time 5h --sub-completion 1s --cool FAST_SA --nonneg LIMIT_ZERO_RATES --num-threads 95% --branch-prefix FM3_1_ZENGBB_Shaw09Mod_DsrTap_CharConst_M5Rate6.5_MMaxOff7.6_NoFix_SpatSeisU3_VarNone_VarSlowCool10 --directory /home/scec-02/kmilner/ucerf3/inversions/2013_05_10-ucerf3p3-cooling-tests --slower-cooling 10
+exit $?
+}}}